Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs2474631 chr1:231541341 T/A 0.000159 280 20.6 27.43 25.78 KM Plot
KIRP rs2474633 chr1:231486989 A/C 0.000125 287 21.97 26.3 25.37 KM Plot
KIRP rs2476676 chr13:46985703 C/A 6.35E-7 289 25.02 30.2 23.23 KM Plot
KIRP rs2479744 chr13:114165250 C/T 8.13E-5 289 25.57 28.17 12.57 KM Plot
KIRP rs2486731 chr1:231532511 C/T 0.00018 289 25.37 26.7 19.9 KM Plot
KIRP rs2487453 chr1:231863204 C/T 7.49E-5 289 26.57 28.17 19.4 KM Plot
KIRP rs2491402 chr1:231494338 T/C 0.000156 285 21.97 26.3 25.37 KM Plot
KIRP rs2494551 chr6:110797563 A/C 1.54E-5 280 18.57 22.8 26.37 KM Plot
KIRP rs2494552 chr6:110797605 G/A 4.3E-6 281 18.57 22.57 26.52 KM Plot
KIRP rs2495205 chr9:78940989 C/T 5.49E-5 289 25.57 28.17 7.27 KM Plot
KIRP rs2497646 chr10:134168741 G/A 0.000185 287 26 25.8 5.67 KM Plot
KIRP rs2510047 chr11:77988668 C/T 8.14E-5 289 19.27 23.6 26.28 KM Plot
KIRP rs2572260 chr1:231486189 T/C 4.13E-5 285 21.97 25.93 25.5 KM Plot
KIRP rs2591050 chr15:57598567 C/G 1.57E-6 288 7.28 29.67 25.63 KM Plot
KIRP rs2654764 chr3:113868384 A/T 2.47E-9 279 25.67 26 4.98 KM Plot